Evolution of genes and genomes on the Drosophila phylogeny

@article{Clark2007EvolutionOG,
  title={Evolution of genes and genomes on the Drosophila phylogeny},
  author={Andrew G. Clark and M. Eisen and Douglas R. Smith and C. Bergman and B. Oliver and T. Markow and T. Kaufman and Manolis Kellis and W. Gelbart and Venky N. Iyer and Daniel A. Pollard and Timothy B Sackton and A. Larracuente and Nadia D. Singh and J. Abad and Dawn N. Abt and B. Adryan and M. Aguad{\'e} and H. Akashi and W. Anderson and C. Aquadro and D. Ardell and R. Arguello and C. Artieri and D. Barbash and D. Barker and P. Barsanti and P. Batterham and S. Batzoglou and D. Begun and A. Bhutkar and Enrico Blanco and Stephanie A Bosak and R. Bradley and A. Brand and M. Brent and Angela N. Brooks and Randall H. Brown and R. Butlin and C. Caggese and B. Calvi and A. Bernardo De Carvalho and A. Caspi and S. Castrezana and S. Celniker and J. Chang and Charles E. Chapple and S. Chatterji and A. Chinwalla and A. Civetta and S. Clifton and J. M. Comeron and J. Costello and J. Coyne and J. Daub and R. David and A. Delcher and Kimberley D. Delehaunty and Chuong B. Do and H. Ebling and K. Edwards and T. Eickbush and Jay D. Evans and A. Filipski and Sven Findei{\ss} and Eva Freyhult and L. Fulton and R. Fulton and A. C. Garcia and A. Gardiner and D. Garfield and Barry E Garvin and G. Gibson and D. Gilbert and S. Gnerre and J. Godfrey and R. Good and Valer Gotea and B. Gravely and A. Greenberg and S. Griffiths-Jones and Samuel S. Gross and R. Guig{\'o} and E. Gustafson and W. Haerty and Matthew W. Hahn and D. Halligan and A. Halpern and Gillian Halter and Mira V. Han and A. Heger and L. Hillier and A. Hinrichs and I. Holmes and R. Hoskins and M. Hubisz and D. Hultmark and Melanie A. Huntley and D. Jaffe and S. Jagadeeshan and William R. Jeck and Justin Johnson and C. Jones and W. Jordan and G. Karpen and E. Kataoka and P. Keightley and P. Kheradpour and E. Kirkness and L. Koerich and K. Kristiansen and D. Kudrna and R. Kulathinal and Sudhir Kumar and R. Kwok and E. Lander and C. Langley and Richard T. Lapoint and B. Lazzaro and So-Jeong Lee and Lisa Levesque and R. Li and Chiao-Feng Lin and M. Lin and K. Lindblad-Toh and A. Llopart and M. Long and Lloyd Low and Elena R. Lozovsky and J. Lu and M. Luo and C. A. Machado and W. Makałowski and M. Marzo and M. Matsuda and L. Matzkin and B. McAllister and C. McBride and Brendan McKernan and K. McKernan and Maria Mendez-Lago and P. Minx and Michael U. Mollenhauer and K. Montooth and S. Mount and Xu Mu and E. Myers and B. Negre and S. Newfeld and R. Nielsen and M. Noor and P. O'Grady and L. Pachter and M. Papaceit and M. Parisi and L. Parts and J. S. Pedersen and G. Pesole and A. Phillippy and C. Ponting and M. Pop and D. Porcelli and J. Powell and Sonja J. Prohaska and K. Pruitt and M. Puig and H. Quesneville and K. R. Ram and D. Rand and Matthew D. Rasmussen and L. Reed and R. Reenan and A. Reily and K. Remington and T. T. Rieger and M. Ritchie and C. Robin and Y. Rogers and C. Rohde and J. Rozas and M. Rubenfield and A. Ru{\'i}z and Susan Russo and S. Salzberg and A. S{\'a}nchez-Gracia and David J Saranga and Hajime Sato and S. Schaeffer and M. Schatz and T. Schlenke and R. Schwartz and C. Segarra and R. Singh and L. Sirot and M. Sirota and Nicholas B Sisneros and C. Smith and Temple F. Smith and J. Spieth and D. Stage and A. Stark and W. Stephan and R. Strausberg and Sebastian Strempel and D. Sturgill and G. Sutton and Wei Tao and S. Teichmann and Y. Tobari and Yoshihiko Tomimura and J. Tsolas and V. Valente and E. Venter and J. Venter and S. Vicario and F. G. Vieira and Albert J. Vilella and A. Villasant{\'e} and B. Walenz and J. Wang and M. Wasserman and T. Watts and Derek Wilson and Richard K. Wilson and R. Wing and M. Wolfner and A. Wong and G. Wong and C. Wu and Gabriel C. Wu and D. Yamamoto and Hsiao-Pei Yang and S. Yang and J. Yorke and Kiyohito Yoshida and E. Zdobnov and P. Zhang and Y. Zhang and A. Zimin and J. Baldwin and Amr Abdouelleil and Jamal Abdulkadir and Adal Abebe and Brikti Abera and Justin Abreu and St Christophe Acer and Lynne Aftuck and Allen Alexander and Peter An and Erica Anderson and S. Anderson and Harindra Arachi and Marc Azer and Pasang Bachantsang and Andrew J. Barry and Tashi Bayul and A. Berlin and D. Bessette and T. Bloom and Jason Blye and Leonid Boguslavskiy and C. Bonnet and Boris Boukhgalter and Imane Bourzgui and Adam Brown and P. Cahill and S. Channer and Yama Cheshatsang and L. Chuda and M. Citroen and Alville J. Collymore and Patrick Cooke and Maura Costello and Katie D'Aco and R. Daza and G. de Haan and Stuart DeGray and C. DeMaso and Norbu Dhargay and K. Dooley and E. Dooley and Missole Doricent and P. Dorje and Kunsang Dorjee and Alan Dupes and Richard Elong and J. Falk and Abderrahim Farina and Susan Faro and Diallo Ferguson and S. Fisher and Chelsea D. Foley and Alicia Franke and Dennis C. Friedrich and L. Gadbois and G. Gearin and Christina R Gearin and G. Giannoukos and Tina Goode and Joseph Graham and E. Grandbois and Sharleen Grewal and Kunsang Gyaltsen and N. Hafez and Birhane Hagos and Jennifer Hall and C. Henson and Andrew Hollinger and T. Honan and Monika D Huard and Leanne Hughes and Brian Hurhula and M. Husby and A. Kamat and Ben Kanga and S. Kashin and Dmitry Khazanovich and Peter Kisner and Krista Lance and M. Lara and William L Lee and N. Lennon and F. Letendre and R. Levine and A. Lipovsky and Xiaohong Liu and Jinlei Liu and S. Liu and Tashi Lokyitsang and Yeshi Lokyitsang and Rakela Lubonja and A. Lui and Pendexter Macdonald and Vasilia Magnisalis and Kebede Maru and Charles D. Matthews and W. McCusker and Susan McDonough and T. Mehta and J. Meldrim and Louis Meneus and Oana Mihai and A. Mihalev and T. Mihova and Rachel Mittelman and Valentine Mlenga and Anna Montmayeur and Leonidas Mulrain and Adam H Navidi and J. Naylor and Tamrat Negash and Thu Nguyen and Nga H. Nguyen and R. Nicol and Choe Norbu and Nyima Norbu and Nathaniel Novod and B. O'Neill and Sahal Osman and E. Markiewicz and Otero L Oyono and C. Patti and Pema Phunkhang and F. Pierre and M. Priest and Sujaa Raghuraman and Filip Rege and Rebecca Reyes and C. Rise and P. Rogov and Keenan Ross and E. Ryan and Sampath Settipalli and T. Shea and Ngawang Sherpa and L. Shi and Diana Shih and Todd Sparrow and J. Spaulding and John Stalker and N. Stange-thomann and S. Stavropoulos and Catherine Stone and C. Strader and S. Tesfaye and T. Thomson and Yama Thoulutsang and Dawa Thoulutsang and K. Topham and Ira Topping and Tsamla Tsamla and Helen Vassiliev and An Vo and Tsering Wangchuk and T. Wangdi and Michael Weiand and Jane Wilkinson and Adam Wilson and S. Yadav and Geneva Young and Q. Yu and Lisa Zembek and Danni Zhong and A. Zimmer and Z. Zwirko and P. Alvarez and W. Brockman and Jonathan Z Butler and Chee-Wye Chin and M. Grabherr and M. Kleber and E. Mauceli and Iain Maccallum},
  journal={Nature},
  year={2007},
  volume={450},
  pages={203-218}
}
Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can… Expand
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
Universal Pacemaker of Genome Evolution in Animals and Fungi and Variation of Evolutionary Rates in Diverse Organisms
Genome evolution in Caenorhabditis.
  • James H. Thomas
  • Biology, Medicine
  • Briefings in functional genomics & proteomics
  • 2008
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