Establishment of a mitochondrial DNA sequence database for the identification of fish species commercially available in South Africa

@article{Cawthorn2011EstablishmentOA,
  title={Establishment of a mitochondrial DNA sequence database for the identification of fish species commercially available in South Africa},
  author={Donna-Mare{\`e} Cawthorn and Harris Andrew Steinman and R. CORLI WITTHUHN},
  journal={Molecular Ecology Resources},
  year={2011},
  volume={11}
}
The limitations intrinsic to morphology‐based identification systems have created an urgent need for reliable genetic methods that enable the unequivocal recognition of fish species, particularly those that are prone to overexploitation and/or market substitution. The aim of this study was to develop a comprehensive reference library of DNA sequence data to allow the explicit identification of 53 commercially available fish species in South Africa, most of which were locally caught marine… 

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References

SHOWING 1-10 OF 57 REFERENCES

DNA barcoding Indian marine fishes

TLDR
In addition to barcode‐based species identification system, phylogenetic relationships among the species have also been attempted and the neighbour‐joining tree revealed distinct clusters in concurrence with the taxonomic status of the species.

DNA barcoding Australasian chondrichthyans: results and potential uses in conservation

TLDR
It is concluded that cox1 barcoding can be used to identify shark and ray species with a very high degree of accuracy and also highlights some taxonomic issues that need to be investigated further.

Limited performance of DNA barcoding in a diverse community of tropical butterflies

TLDR
This work assesses the applicability of DNA barcoding to a diverse community of butterflies from the upper Amazon, using a group with a well-established morphological taxonomy to serve as a reference and recommends the addition of nuclear sequence data.

DNA barcoding of Pacific Canada’s fishes

TLDR
The present study shows that most fish species in Pacific Canadian waters correspond to a single, tightly cohesive array of barcode sequences that are distinct from those of any other species, but also highlights some taxonomic issues that need further investigation.

Molecular identification methods of fish species: reassessment and possible applications

  • F. Teletchea
  • Biology
    Reviews in Fish Biology and Fisheries
  • 2009
TLDR
The tremendous advances in molecular biology in the past 10 years has rendered possible the study of DNA from virtually any substrates, offering new perspectives for the development of various applications, which will likely continue to increase in the future.

DNA barcodes of fish of the Scotia Sea, Antarctica indicate priority groups for taxonomic and systematics focus

TLDR
The utility of DNA barcoding in providing a valuable taxonomic framework for fundamental population studies through assigning life history stages or other morphologically ambiguous samples to parental species is emphasized.

Validation of the barcoding gene COI for use in forensic genetic species identification.

Identification of Birds through DNA Barcodes

TLDR
The finding of large COI sequence differences between, as compared to small differences within, species confirms the effectiveness of COI barcodes for the identification of bird species, and implies that a standard screening threshold of sequence difference could speed the discovery of new animal species.

Barcoding Nemo: DNA-Based Identifications for the Ornamental Fish Trade

TLDR
Although incomplete, this barcode library already provides a new species identification tool for the ornamental fish industry, opening a realm of applications linked to collection practices, regulatory control and conservation.

The Real maccoyii: Identifying Tuna Sushi with DNA Barcodes – Contrasting Characteristic Attributes and Genetic Distances

TLDR
The Convention on International Trade Endangered Species (CITES) requires that listed species must be identifiable in trade, and this research fulfills this requirement for tuna, and supports the nomination of northern bluefin tuna for CITES listing in 2010.
...