Corpus ID: 220280496

# Entropy production with multiple coupling: unraveling the role of time-scales and detailed balance in biological systems

@article{Busiello2020EntropyPW,
title={Entropy production with multiple coupling: unraveling the role of time-scales and detailed balance in biological systems},
author={Daniel Maria Busiello and Deepak Gupta and Amos Maritan},
journal={arXiv: Statistical Mechanics},
year={2020}
}
• Published 1 July 2020
• Physics, Computer Science
• arXiv: Statistical Mechanics
A general framework to describe a vast majority of biological systems is to model them as stochastic processes in which multiple couplings are in play at the same time. Molecular motors, chemical reaction networks, catalytic enzymes, and particles exchanging heat with different baths, constitute some interesting examples of such a modelization. Moreover, they usually operate out of equilibrium, being characterized by a net production of entropy, which entails a constrained efficiency. Hitherto… Expand

#### References

SHOWING 1-10 OF 53 REFERENCES
Entropy production in systems with unidirectional transitions
• Mathematics, Physics
• 2019
The entropy production is one of the most essential features for systems operating out of equilibrium. The formulation for discrete-state systems goes back to the celebrated Schnakenberg's work andExpand
Stochastic thermodynamics, fluctuation theorems and molecular machines.
• U. Seifert
• Physics, Biology
• Reports on progress in physics. Physical Society
• 2012
Efficiency and, in particular, efficiency at maximum power can be discussed systematically beyond the linear response regime for two classes of molecular machines, isothermal ones such as molecular motors, and heat engines such as thermoelectric devices, using a common framework based on a cycle decomposition of entropy production. Expand
Entropy production for coarse-grained dynamics
• Physics, Mathematics
• New Journal of Physics
• 2019
Systems out of equilibrium exhibit a net production of entropy. We study the dynamics of a stochastic system represented by a Master Equation that can be modeled by a Fokker-Planck equation in aExpand
Entropy production in master equations and Fokker–Planck equations: facing the coarse-graining and recovering the information loss
• Physics, Mathematics
• Journal of Statistical Mechanics: Theory and Experiment
• 2019
Systems operating out of equilibrium exchange energy and matter with the environment, thus producing entropy in their surroundings. Since the entropy production depends on the current flowingExpand
Quantifying dissipation using fluctuating currents
• Medicine, Physics
• Nature Communications
• 2019
The determination of entropy production from experimental data is a challenge but a recently introduced theoretical tool, the thermodynamic uncertainty relation, allows one to infer a lower bound on entropy production, and a critical assessment of the practical implementation is provided. Expand
Dissipation-driven selection in non-equilibrium chemical networks
• Physics
• 2019
Life has most likely originated as a consequence of processes taking place in non-equilibrium conditions (\textit{e.g.} in the proximity of deep-sea thermal vents) selecting states of matter thatExpand
Nonequilibrium Thermodynamics of Chemical Reaction Networks: Wisdom from Stochastic Thermodynamics
• Physics
• 2016
We build a rigorous nonequilibrium thermodynamic description for open chemical reaction networks of elementary reactions. Their dynamics is described by deterministic rate equations satisfying massExpand
Entropy production in nonequilibrium systems at stationary states.
• Physics, Medicine
• Physical review letters
• 2012
A stochastic approach to nonequilibrium thermodynamics based on the expression of the entropy production rate advanced by Schnakenberg for systems described by a master equation is presented, finding a singularity at the critical point of the linear-logarithm type. Expand
Similarities and differences between non-equilibrium steady states and time-periodic driving in diffusive systems
• Physics
• New Journal of Physics
• 2018
A system that violates detailed balance evolves asymptotically into a non-equilibrium steady state (NESS) with non-vanishing currents. Analogously, when detailed balance holds at any instant of timeExpand
Energy transduction of isothermal ratchets: generic aspects and specific examples close to and far from equilibrium.
• Physics, Medicine
• Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics
• 1999
We study the energetics of isothermal ratchets which are driven by a chemical reaction between two states, and operate in contact with a single heat bath of constant temperature. We discuss genericExpand