Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment

@inproceedings{Marshall2009EnsembleDO,
  title={Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment},
  author={Paul Marshall and Matthew Woitaszek and Henry M. Tufo and Rob Knight and Daniel McDonald and Julia Goodrich},
  booktitle={SC-MTAGS},
  year={2009}
}
This paper discusses our work providing support for processing a large number of short tasks within the context of our development of a collaborative bioinformatics knowledge environment for structural biologists, environmental microbiologists, and evolutionary biologists. We have designed and implemented a new ensemble-based task dispatching system that we have deployed on a Blue Gene/L system in conjunction with the Blue Gene's High Throughput Computing (HTC) capability. Unlike our prior… CONTINUE READING

From This Paper

Figures, tables, and topics from this paper.

Citations

Publications citing this paper.
Showing 1-4 of 4 extracted citations

References

Publications referenced by this paper.
Showing 1-6 of 6 references

Toward loosely coupled programming on petascale systems

2008 SC - International Conference for High Performance Computing, Networking, Storage and Analysis • 2008
View 7 Excerpts
Highly Influenced

The Hadoop Distributed File System: Architecture and Design

D. Borthakur
Hadoop Project Website, • 2007
View 4 Excerpts
Highly Influenced

Cobalt: An Open Source Platform for HPC System Software Research

N. Desai
Edinburgh BG/L System Software Workshop, • 2005
View 4 Excerpts
Highly Influenced

Similar Papers

Loading similar papers…