Efficient Compression of Genomic Sequences

@article{Pratas2016EfficientCO,
  title={Efficient Compression of Genomic Sequences},
  author={Diogo Pratas and Armando J. Pinho and Paulo Jorge S. G. Ferreira},
  journal={2016 Data Compression Conference (DCC)},
  year={2016},
  pages={231-240}
}
The number of genomic sequences is growing substantially. Besides discarding part of the data, the only efficient possibility for coping with this trend is data compression. We present an efficient compressor for genomic sequences, allowing both reference-free and referential compression. This compressor uses a mixture of context models of several orders, according to two model classes: reference and target. A new type of context model, which is capable of tolerating substitution errors, is… Expand
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