In this paper, we analyze unsteady two dimensional hydromagnetic forced convection boundary layer flow of a viscous incompressible fluid along flat plates with thermophoresis. The potential flow velocity has been taken as a function of the distance x and time t. The governing partial differential equations are transformed to ordinary differential equation by applying local similarity transformation. The resulting similarity equations are then solved numerically for unsteady case, applying Nachtsheim-Swigert shooting iteration technique with six order Runge-Kutta method. The variations in fluid velocity, fluid temperature and species concentration are displayed graphically and discussed for different material parameters entering into the analysis. The effects of the pertinent parameters on the skin-friction coefficient, wall heat transfer coefficient and wall deposition flux rate are also displayed in tabulated form and discussed them from the physical point of view. An analysis of the obtained results shows that the flow field is influenced appreciably by the magnetic field parameter and the thermophoresis particle deposition.