EPOS: EEG Processing Open-Source Scripts
@article{Rodrigues2021EPOSEP, title={EPOS: EEG Processing Open-Source Scripts}, author={Johannes Rodrigues and Martin Wei{\ss} and Johannes Hewig and John J. B. Allen}, journal={Frontiers in Neuroscience}, year={2021}, volume={15} }
Background Since the replication crisis, standardization has become even more important in psychological science and neuroscience. As a result, many methods are being reconsidered, and researchers’ degrees of freedom in these methods are being discussed as a potential source of inconsistencies across studies. New Method With the aim of addressing these subjectivity issues, we have been working on a tutorial-like EEG (pre-)processing pipeline to achieve an automated method based on the semi…
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References
SHOWING 1-10 OF 87 REFERENCES
An automatic pre-processing pipeline for EEG analysis (APP) based on robust statistics
- Computer ScienceClinical Neurophysiology
- 2018
Computational testing for automated preprocessing: a Matlab toolbox to enable large scale electroencephalography data processing
- Computer Science, BiologyPeerJ Comput. Sci.
- 2017
The computational testing for automated preprocessing (CTAP) toolbox is presented, to facilitate batch-processing that is easy for experts and novices alike; testing and manual comparison of preprocessing methods.
Automagic: Standardized preprocessing of big EEG data
- Computer ScienceNeuroImage
- 2019
This examination suggests that a applying a pipeline of algorithms to detect artifactual channels in combination with Multiple Artifact Rejection Algorithm (MARA), an independent component analysis (ICA)-based artifact correction method, is sufficient to reduce a large extent of artifacts.
The PREP pipeline: standardized preprocessing for large-scale EEG analysis
- Computer ScienceFront. Neuroinform.
- 2015
It is demonstrated that ordinary average referencing improves the signal-to-noise ratio, but that noisy channels can contaminate the results and a multi-stage robust referencing scheme is introduced to deal with the noisy channel-reference interaction.
Event-related potentials : a methods handbook
- Biology
- 2005
The use of ERPs in relation to such specific participant populations as children and neuropsychological patients and the ways in which ERPs can be combined with related methodologies, including intracranial ERPs and hemodynamic imaging are covered.
EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis
- Computer ScienceJournal of Neuroscience Methods
- 2004
BEAPP: The Batch Electroencephalography Automated Processing Platform
- Computer Science, PsychologyFront. Neurosci.
- 2018
The Batch EEG Automated Processing Platform (BEAPP), an automated, flexible EEG processing platform incorporating freely available software tools for batch processing of multiple EEG files across multiple processing steps, aims to streamline batch EEG processing, improve accessibility to computational EEG assessment, and increase reproducibility of results.
A practical guide to the selection of independent components of the electroencephalogram for artifact correction
- Computer ScienceJournal of Neuroscience Methods
- 2015
Automatic Classification of Artifactual ICA-Components for Artifact Removal in EEG Signals
- Computer ScienceBehavioral and Brain Functions
- 2011
This work proposes a universal and efficient classifier of ICA components for the subject independent removal of artifacts from EEG data that is applicable for different electrode placements and supports the introspection of results.
ICLabel: An automated electroencephalographic independent component classifier, dataset, and website
- Computer Science, Environmental ScienceNeuroImage
- 2019