Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.

@article{Mathews2002DynalignAA,
  title={Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.},
  author={David H. Mathews and Douglas H. Turner},
  journal={Journal of molecular biology},
  year={2002},
  volume={317 2},
  pages={191-203}
}
With the rapid increase in the size of the genome sequence database, computational analysis of RNA will become increasingly important in revealing structure-function relationships and potential drug targets. RNA secondary structure prediction for a single sequence is 73 % accurate on average for a large database of known secondary structures. This level of accuracy provides a good starting point for determining a secondary structure either by comparative sequence analysis or by the… CONTINUE READING
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