Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.

@article{Roer2017DevelopmentOA,
  title={Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.},
  author={Louise Roer and Veronika L. Tchesnokova and Rosa Lundbye Alles{\o}e and Mariya Muradova and Sujay Chattopadhyay and Johanne Ahrenfeldt and Martin Christen Fr{\o}lund Thomsen and Ole Lund and Frank Hansen and Anette Marie Hammerum and Evgeni V. Sokurenko and Henrik Hasman},
  journal={Journal of clinical microbiology},
  year={2017},
  volume={55 8},
  pages={
          2538-2543
        }
}
The aim of this study was to construct a valid publicly available method for in silico fimH subtyping of Escherichia coli particularly suitable for differentiation of fine-resolution subgroups within clonal groups defined by standard multilocus sequence typing (MLST). FimTyper was constructed as a FASTA database containing all currently known fimH alleles. The software source code is publicly available at https://bitbucket.org/genomicepidemiology/fimtyper, the database is freely available at… CONTINUE READING
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