Corpus ID: 14771295

Developing a Protein Interaction Prediction Algorithm on HPC

  title={Developing a Protein Interaction Prediction Algorithm on HPC},
  author={Wael S. Afifi and A. El-Moursy and S. M. Nassar and M. Abo-Elsoud and M. A. Mohamed},
  • Wael S. Afifi, A. El-Moursy, +2 authors M. A. Mohamed
  • Published 2012
  • Computer Science
  • The prediction of protein-protein interaction is one of the fundamental problems in bioinformatics. A novel algorithm called STRIKE has shown to achieve good performance in protein-protein interaction prediction. It assumes that proteins interact if they contain similar substrings of amino acids. In this paper, we developed a parallel STRIKE algorithm and we implemented our proposal on Cluster system. Using short protein sequence sets, the overall execution time of a parallel implementation of… CONTINUE READING

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