Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB.

@article{Ullah2006DeterministicMA,
  title={Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB.},
  author={Mukhtar Ullah and Henning T Schmidt and K H Cho and Olaf Wolkenhauer},
  journal={Systems biology},
  year={2006},
  volume={153 2},
  pages={53-60}
}
The analysis of complex biochemical networks is conducted in two popular conceptual frameworks for modelling. The deterministic approach requires the solution of ordinary differential equations (ODEs, reaction rate equations) with concentrations as continuous state variables. The stochastic approach involves the simulation of differential-difference equations (chemical master equations, CMEs) with probabilities as variables. This is to generate counts of molecules for chemical species as… CONTINUE READING