Detection of differentially expressed segments in tiling array data

@article{Otto2012DetectionOD,
  title={Detection of differentially expressed segments in tiling array data},
  author={Christian Otto and Kristin Reiche and J{\"o}rg Hackerm{\"u}ller},
  journal={Bioinformatics},
  year={2012},
  volume={28 11},
  pages={1471-9}
}
MOTIVATION Tiling arrays have been a mainstay of unbiased genome-wide transcriptomics over the last decade. Currently available approaches to identify expressed or differentially expressed segments in tiling array data are limited in the recovery of the underlying gene structures and require several parameters that are intensity-related or partly dataset-specific. RESULTS We have developed TileShuffle, a statistical approach that identifies transcribed and differentially expressed segments as… CONTINUE READING
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References

Publications referenced by this paper.
Showing 1-10 of 40 references

The dvelopmental transcriptome of Drosophila melanogaster

  • J. E. Sandler, K. H. Wan, +12 authors S. E. Celniker
  • Nature
  • 2011

Genome - wide identification of targets of the droshapasha / DGCR 8 complex

  • S. Kadener, J. Rodriguez, +4 authors M. Rosbash
  • 2009

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