Detecting interspecific recombination with a pruned probabilistic divergence measure

@article{Husmeier2005DetectingIR,
  title={Detecting interspecific recombination with a pruned probabilistic divergence measure},
  author={Dirk Husmeier and Frank Wright and Iain Milne},
  journal={Bioinformatics},
  year={2005},
  volume={21 9},
  pages={1797-806}
}
MOTIVATION A promising sliding-window method for the detection of interspecific recombination in DNA sequence alignments is based on the monitoring of changes in the posterior distribution of tree topologies with a probabilistic divergence measure. However, as the number of taxa in the alignment increases or the sliding-window size decreases, the posterior distribution becomes increasingly diffuse. This diffusion blurs the probabilistic divergence signal and adversely affects the detection… CONTINUE READING

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