Design and evaluation of a sequence capture system for genome-wide SNP genotyping in highly heterozygous plant genomes: a case study with a keystone Neotropical hardwood tree genome

@inproceedings{SilvaJunior2018DesignAE,
  title={Design and evaluation of a sequence capture system for genome-wide SNP genotyping in highly heterozygous plant genomes: a case study with a keystone Neotropical hardwood tree genome},
  author={Orzenil B Silva-Junior and Dario Grattapaglia and Evandro Novaes and Rosane Garcia Collevatti},
  booktitle={DNA research : an international journal for rapid publication of reports on genes and genomes},
  year={2018}
}
Targeted sequence capture coupled to high-throughput sequencing has become a powerful method for the study of genome-wide sequence variation. Following our recent development of a genome assembly for the Pink Ipê tree (Handroanthus impetiginosus), a widely distributed Neotropical timber species, we now report the development of a set of 24,751 capture probes for single-nucleotide polymorphisms (SNPs) characterization and genotyping across 18,216 distinct loci, sampling more than 10 Mbp of the… CONTINUE READING

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