Design and Validation of Diffusion MRI Models of White Matter
@article{Jelescu2017DesignAV, title={Design and Validation of Diffusion MRI Models of White Matter}, author={Ileana O. Jelescu and Matthew D. Budde}, journal={Frontiers in physics}, year={2017}, volume={28} }
Diffusion MRI is arguably the method of choice for characterizing white matter microstructure in vivo. Over the typical duration of diffusion encoding, the displacement of water molecules is conveniently on a length scale similar to that of the underlying cellular structures. Moreover, water molecules in white matter are largely compartmentalized which enables biologically-inspired compartmental diffusion models to characterize and quantify the true biological microstructure. A plethora of…
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References
SHOWING 1-10 OF 195 REFERENCES
Complex geometric models of diffusion and relaxation in healthy and damaged white matter
- Environmental ScienceNMR in biomedicine
- 2010
The reproducibility of simulations of diffusion in complex geometries is presented and the framework is quantitative, does not require specialized hardware, is easily implemented with little programming experience, and is freely available as open‐source software.
Compartment models of the diffusion MR signal in brain white matter: A taxonomy and comparison
- BiologyNeuroImage
- 2012
Degeneracy in model parameter estimation for multi‐compartmental diffusion in neuronal tissue
- MathematicsNMR in biomedicine
- 2016
The results suggest that theBiophysical interpretation of dMRI model parameters crucially depends on establishing which of the minima is closer to the biophysical reality and the size of the uncertainty associated with each parameter.
Universal power-law scaling of water diffusion in human brain defines what we see with MRI
- Biology
- 2016
The observation of a universal power-law scaling of the dMRI signal identifies the contribution from water specifically confined inside narrow impermeable axons, validating the overarching assumption behind models of diffusion in neuronal tissue.
Optimization of a free water elimination two-compartment model for diffusion tensor imaging
- Materials ScienceNeuroImage
- 2014
Estimation of Extracellular Volume from Regularized Multi-shell Diffusion MRI
- BiologyMICCAI
- 2012
This work adds low b-value shells to a regular DTI acquisition and presents methods to improve the estimation of the model parameters using the extra information, and defines a Laplace-Beltrami regularization operator that further stabilizes the multi-shell estimation.
Clinical feasibility of using mean apparent propagator (MAP) MRI to characterize brain tissue microstructure
- BiologyNeuroImage
- 2016
Histological validation of high-resolution DTI in human post mortem tissue
- BiologyFront. Neuroanat.
- 2015
A very good agreement was found between DTI and myelin orientations with the majority of voxels showing angular differences less than 10°, which has potentially important implications for tractography algorithms applied to high resolution diffusion MRI data if the aim is to move across the gray/white matter boundary.