Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

@inproceedings{Guizard2016DeepLU,
  title={Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools},
  author={S{\'e}bastien Guizard and Beno{\^i}t Pi{\'e}gu and Peter Arensburger and Florian Guillou and Yves Bigot},
  booktitle={BMC Genomics},
  year={2016}
}
The program RepeatMasker and the database Repbase-ISB are part of the most widely used strategy for annotating repeats in animal genomes. They have been used to show that avian genomes have a lower repeat content (8–12 %) than the sequenced genomes of many vertebrate species (30–55 %). However, the efficiency of such a library-based strategies is dependent on the quality and completeness of the sequences in the database that is used. An alternative to these library based methods are methods… CONTINUE READING
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