Crystal structure of the met represser–operator complex at 2.8 Å resolution reveals DNA recognition by β-strands
@article{Somers1992CrystalSO, title={Crystal structure of the met represser–operator complex at 2.8 Å resolution reveals DNA recognition by $\beta$-strands}, author={William Stuart Somers and Simon E V Phillips}, journal={Nature}, year={1992}, volume={359}, pages={387-393} }
The crystal structure of the met represser–operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein β-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognizes sequence-dependent distortion or flexibility of the operator phosphate backbone…
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References
SHOWING 1-10 OF 45 REFERENCES
Probing met represser–operator recognition in solution
- BiologyNature
- 1992
It is demonstrated that recognition of operator sequences occurs through side chains in the β-strand motif and that dimer–dimer interactions are required for effective repression.
Crystal structure of trp represser/operator complex at atomic resolution
- ChemistryNature
- 1988
The crystal structure of the trp repressor/operator complex shows an extensive contact surface, including 24 direct and 6 solvent-mediated hydrogen bonds to the phosphate groups of the DNA. There are…
Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees
- Chemistry, BiologyScience
- 1991
The 3 angstrom resolution crystal structure of the Escherichia coli catabolite gene activator protein (CAP) complexed with a 30-base pair DNA sequence shows that the DNA is bent by 90 degrees. This…
Structure of the lambda complex at 2.5 A resolution: details of the repressor-operator interactions
- ChemistryScience
- 1988
The crystal structure of a complex containing the DNA-binding domain of lambda repressor and a lambda operator site was determined at 2.5 A resolution and refined to a crystallographic R factor of…
Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor
- ChemistryNature
- 1989
The three-dimensional crystal structure of met repressor shows a dimer of intertwined monomers, which do not have the helix-turn-helix motif characteristic of other bacterial repressor and activator structures, and is proposed to be a model for binding of several dimers to met operator regions.
Recognition of a DNA operator by the repressor of phage 434: a view at high resolution
- Chemistry, BiologyScience
- 1988
High-resolution x-ray crystallography was used to study the DNA-binding domain of phage 434 repressor in complex with a synthetic DNA operator, showing recognition of the operator by direct interactions with base pairs in the major groove, combined with the sequence-dependent ability of DNA to adopt the required conformation on binding repressor.
Structure of Arc represser in solution: evidence for a family of β-sheet DMA-binding proteins
- ChemistryNature
- 1990
The three-dimensional structure of the Arc dimer is determined from an extensive set of inter proton-distance data obtained from 1H NMR spectroscopy, and two Arc dimers bind with their β-sheet regions in successive major grooves on one side of the DNA helix, similar to the Met repressor interaction.
The DNA binding arm of lambda repressor: critical contacts from a flexible region.
- Chemistry, BiologyScience
- 1991
The symmetry of the complex breaks down near the center of the site, and these results suggest a revision in the traditional alignment of the six lambda operator sites.
Protein-DNA conformational changes in the crystal structure of a lambda Cro-operator complex.
- ChemistryProceedings of the National Academy of Sciences of the United States of America
- 1990
The structure of a complex of bacteriophage lambda Cro protein with a 17-base-pair operator with 3.9-A resolution confirms the general features of the model previously proposed for the interaction of Cro with DNA.