Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives.
@article{Rasheed2017CropBC, title={Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives.}, author={Awais Rasheed and Yuanfeng Hao and Xianchun Xia and Awais Khan and Yunbi Xu and Rajeev Kumar Varshney and Zhonghu He}, journal={Molecular plant}, year={2017}, volume={10 8}, pages={ 1047-1064 } }
281 Citations
Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array
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This review presents a complete overview of SNP array development and applications in polypoid crops, which will benefit the research in molecular breeding and genetics of crops with complex genomes.
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Efficient genome-wide genotyping strategies and data integration in crop plants
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- 2018
This review describes and discusses the advantages, challenges and, most importantly, solutions to facilitate data processing, the handling of missing data, and cross-platform data integration of NGS-based genotyping methods.
Editorial: Genome Wide Association Studies and Genomic Selection for Crop Improvement in the Era of Big Data
- MedicineFrontiers in Genetics
- 2022
This Research Topic sought high-quality contributions, covering various aspects of genomics-assisted-breeding: increase in yield, improvement of nutritional content and end-use quality of crops, climate-smart agriculture, cropping systems in agriculture.
Development of multiple SNP marker panels affordable to breeders through genotyping by target sequencing (GBTS) in maize
- BiologyMolecular Breeding
- 2019
Highly consistent marker genotypes were obtained and highly consistent phylogenetic relationships were generated by using four marker panels and two genotype panels, providing strong evidence for the reliability of SNP markers and GBTS genotyping platform.
Genotyping by Sequencing Advancements in Barley
- BiologyFrontiers in Plant Science
- 2022
Though considered a reliable alternative to WGS, GBS also presents various computational difficulties, but GBS-specific pipelines are designed to overcome these challenges and a robust design for GBS can facilitate the imputation to the WGS level of crops with high linkage disequilibrium.
Molecular Marker Development and Application for Improving Qualities in Bread Wheat
- Biology
- 2020
This chapter summarizes progress in gene cloning, gene specific marker (functional marker) development and validation, establishment of high-throughput platform in genotyping, as well as integration of molecular marker technology with conventional quality testing and traditional breeding since 2000.
Broadening the horizon of crop research: a decade of advancements in plant molecular genetics to divulge phenotype governing genes
- BiologyPlanta
- 2022
The latest developments in genome sequencing and genotyping are described along with a comprehensive evaluation of the last 10-year headways in forward-genetic techniques that have shifted the focus of plant research from model plants to diverse crops to help in developing high-yielding and climate-resilient crops.
Fine mapping and gene cloning in the post-NGS era: advances and prospects
- Biology, MedicineTheoretical and Applied Genetics
- 2020
This review compares the marker systems used for fine mapping and QTL cloning in the pre- and post-NGS era, and discusses how different NGS platforms in combination with advanced experimental designs have improved trait analysis and fine mapping.
Toward the sequence-based breeding in legumes in the post-genome sequencing era
- Medicine, BiologyTheoretical and Applied Genetics
- 2018
A sequence-based breeding approach which includes use of independent or combination of parental selection, enhancing genetic diversity of breeding programs, forward breeding for early generation selection, and genomic selection using sequencing/genotyping technologies is proposed.
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