CpGassoc: an R function for analysis of DNA methylation microarray data

@article{Barfield2012CpGassocAR,
  title={CpGassoc: an R function for analysis of DNA methylation microarray data},
  author={Richard T. Barfield and Varun Kilaru and Alicia K. Smith and Karen N. Conneely},
  journal={Bioinformatics},
  year={2012},
  volume={28 9},
  pages={1280-1}
}
SUMMARY With the increasing availability of high-density methylation microarrays, there has been growing interest in analysis of DNA methylation data. We have developed CpGassoc, an R package that can efficiently perform the statistical analysis needed for increasingly large methylation datasets. CpGassoc is a modular, expandable package with functions to perform rapid analyses of DNA methylation data via fixed or mixed effects models, to perform basic quality control, to carry out permutation… CONTINUE READING
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