Computer simulation of protein folding
@article{Levitt1975ComputerSO, title={Computer simulation of protein folding}, author={Michael Levitt and Arieh Warshel}, journal={Nature}, year={1975}, volume={253}, pages={694-698} }
A new and very simple representation of protein conformations has been used together with energy minimisation and thermalisation to simulate protein folding. Under certain conditions, the method succeeds in ‘renaturing’ bovine pancreatic trypsin inhibitor from an open-chain conformation into a folded conformation close to that of the native molecule.
897 Citations
Protein folding and unfolding.
- Biology, ChemistryMolecular biology, biochemistry, and biophysics
- 1977
The elucidation of the pathways of folding, the magnitude of the different thermodynamic forces involed, and the kinetics of such processes are still in a relatively early stage of investigation.
Solvation energy in protein folding and binding
- ChemistryNature
- 1986
A method for calculating the stability in water of protein structures, starting from their atomic coordinates, as the product of the accessibility of the atom to solvent and its atomic solvation parameter is developed.
Folding Polymer Chains
- Biology
- 2004
Molecular dynamics simulations are used to study helix formation in a simple model polymer chain that is subject to excluded volume and torsional interactions. The changing conformations exhibited by…
Protein-folding dynamics
- PhysicsNature
- 1976
In a discussion of the dynamics of protein folding two limiting models (random-search nucleation and chain propagation., diffusion–collision) are considered. It is suggested that the latter may have…
Prediction of protein structure from amino acid sequence
- BiologyNature
- 1978
This work uses simple models to represent protein conformation and interatomic interactions, together with the knowledge gained from analyses of known protein structures to predict the three-dimensional structure of a protein from its amino acid sequence.
A computer model to dynamically simulate protein folding: Studies with crambin
- BiologyProteins
- 1989
Many characteristics expected of true proteins, such as the sequence‐dependent formation of secondary structure, the partitioning of hydrophobic residues, and specific disulfide, are suggested so that the model may accurately simulate the folding process.
Pathways for protein folding: is a new view needed?
- BiologyCurrent opinion in structural biology
- 1998
Characteristic temperatures of folding of a small peptide.
- PhysicsProceedings of the National Academy of Sciences of the United States of America
- 1997
It is shown that the folding of a small peptide is a multistage process associated with two characteristic temperatures, the collapse temperature Ttheta and the folding temperature T, which gives supporting evidence for the energy landscape picture and funnel concept.
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