Computation and Visualization of Protein Topology Graphs Including Ligand Information

  title={Computation and Visualization of Protein Topology Graphs Including Ligand Information},
  author={Tim Sch{\"a}fer and Patrick May and Ina Koch},
Motivation: Ligand information is of great interest to understand protein function. Protein structure topology can be modeled as a graph with secondary structure elements as vertices and spatial contacts between them as edges. Meaningful representations of such graphs in 2D are required for the visual inspection, comparison and analysis of protein folds, but their automatic visualization is still challenging. We present an approach which solves this task, supports different graph types and can… CONTINUE READING


Publications referenced by this paper.
Showing 1-10 of 32 references

Lengauer . Detection of distant structural similarities in a set of proteins using a fast graph - based method

  • I. Koch, T.
  • Protein supersecondary structure , chapter…
  • 2012

A Novel Method for Comparing Topological Models of Protein Structures Enhanced with Ligand Information

  • M. Veeramalai
  • PhD thesis,
  • 2005

Similar Papers

Loading similar papers…