Comprehensive analysis of Japanese archipelago population history by detecting ancestry-marker polymorphisms without using ancient DNA data

@article{Watanabe2020ComprehensiveAO,
  title={Comprehensive analysis of Japanese archipelago population history by detecting ancestry-marker polymorphisms without using ancient DNA data},
  author={Yusuke Watanabe and Jun Ohashi},
  journal={bioRxiv},
  year={2020}
}
Modern Japanese have two major ancestral populations: the indigenous Jomon people and immigrants from continental East Asia. To figure out the population history in Japanese archipelago, we developed a reference-free detection method of genetic components from ancestral populations using a summary statistic, the ancestry-marker index (AMI). We applied the AMI to modern Japanese samples and identified 208,648 SNPs that were likely derived from the Jomon people (Jomon-derived SNPs). The analysis… 

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