Complete genome sequence of a novel calicivirus from a goose

@article{Liao2014CompleteGS,
  title={Complete genome sequence of a novel calicivirus from a goose},
  author={Qinfeng Liao and Xiaoyang Wang and Dan Wang and Dabing Zhang},
  journal={Archives of Virology},
  year={2014},
  volume={159},
  pages={2529-2531}
}
A novel goose calicivirus (GoCV) was sequenced. The 8013-nt-long genome was organized into two open reading frames that were in the same frame and separated by 3 nucleotides. This feature is similar to what has been observed in turkey calicivirus (TuCV). Comparison of GoCV with other caliciviruses showed that it shared the highest amino acid sequence identities of 62, 38, and 52 % in the nonstructural protein, VP1, and VP2, respectively, with TuCV. Phylogenetic analysis based on the amino acid… 
View on Springer
ncbi.nlm.nih.gov
24 Citations
Highly Influential Citations
2
Background Citations
9

24 Citations

Citation Type

Citation Type

Genetic characterization of a novel calicivirus from a goose
TLDR
Calicivirus H146 was identified as a founding member of a novel genus for which the name “Sanovirus” is proposed, similar to what has been found in the bat sapovirus TLC58.
Genomic characterization of a novel calicivirus, FHMCV-2012, from baitfish in the USA
TLDR
During regulatory sampling of fathead minnows, a novel calicivirus was isolated from homogenates of kidney and spleen inoculated into bluegill fry (BF-2) cells, likely representing a prototype species of a novel genus in the family Caliciviridae, tentatively named “Minovirus”.
Calicivirus Non-structural Proteins: Potential Functions in Replication and Host Cell Manipulation
TLDR
Recent in silico studies that identified previously overlooked putative functional domains and structural features, including transmembrane domains that suggest the presence of viroporins are discussed.
Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil
TLDR
Findings shed new light on the diversity of viruses in migratory birds with the notable characterization of a novel astrovirus and calicivirus.
Sequencing and molecular modeling identifies candidate members of Caliciviridae family in bats
Rapid detection of H146-like goose calicivirus using a TaqMan-based real-time PCR assay.
Immune Response Modulation by Caliciviruses
TLDR
Different aspects of how caliciviruses are implicated in membrane rearrangements, apoptosis, and evasion of the immune responses are discussed, highlighting some of the pathogenic mechanisms triggered by different members of the Calicviridae family.
Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo-Blood Group Antigen Binding Profiles
TLDR
The potential for bat caliciviruses to bind histo-blood group antigens and overcome a significant barrier to cross-species transmission is indicated, reiterating the importance of surveillance of wild-animal populations, especially of bats, for novel viral pathogens.
Discovery and Characterization of Novel RNA Viruses in Aquatic North American Wild Birds
TLDR
Three novel RNA viruses that were identified in oropharyngeal/cloacal swabs collected from wild birds increase the knowledge about avian virus diversity and host distributions.
Caliciviridae Other Than Noroviruses
TLDR
All Caliciviridae have closely related genome structures, but are genetically and antigenically highly diverse and infect a wide range of mammalian host species including humans.
...
1
2
3
...

References

SHOWING 1-10 OF 20 REFERENCES
Genomic characterization of swine caliciviruses representing a new genus of Caliciviridae
TLDR
Based on the genomic analyses presented, the St-Valérien-like viruses are members of a new genus of Caliciviridae for which the name Valovirus is proposed.
Genetic characterization of a novel calicivirus from a chicken
TLDR
Phylogenetic analysis of the deduced partial 2C helicase/NTPase, 3C cysteine protease, RNA-dependent RNA polymerase and complete VP1 capsid protein amino acid sequences showed that the Bavaria virus is genetically related to but distinct from sapoviruses and lagovirus.
Characterization of a Rhesus Monkey Calicivirus Representing a New Genus of Caliciviridae
TLDR
Although the pathogenicity of TV in rhesus macaques remains to be elucidated, the likelihood of TV causing intestinal infection and the availability of a tissue culture system make this virus a valuable surrogate for human CVs.
Discovery and genetic characterization of novel caliciviruses in German and Dutch poultry
TLDR
Attempts were made to propagate chicken and turkey CVs from both the bavovirus and nacovirus clusters in primary chicken cecal cells, embryonal liver cells and fibroblast cells, but these attempts were not successful.
A Highly Divergent Picornavirus in a Marine Mammal
TLDR
The phylogenetic position of the tentatively named seal picornavirus 1 (SePV-1) as an outlier to the grouping of parechoviruses was found consistently in alignable regions of the genome, and its mix of characteristics relative to its closest relatives support the provisional classification of SePv-1 as the prototype for a new genus in the family Picornaviridae.
A Member of a New Picornaviridae Genus Is Shed in Pig Feces
TLDR
It is proposed that SPaV1 represents the first member of a novel Picornaviridae genus related to parechoviruses, and is named “Pasivirus” for Parecho sister clade virus, with “Swine pasivirus 1” (SPaV 1) as the type species.
Identification of the cleavage sites of sapovirus open reading frame 1 polyprotein.
TLDR
The alignment of the SaV full-length ORF1 amino acid sequences indicated that the dipeptides used for the cleavage sites were either E or Q at the P1 position and A, G or S at theP1' position, which were conserved in the GI, GII, GIII, GIV and GV SaV ORF 1 polyprotein.
Rabbit hemorrhagic disease virus: genome organization and polyprotein processing of a calicivirus studied after transient expression of cDNA constructs.
TLDR
To study viral protein expression a cDNA construct containing the entire protein-coding region of the virus was established and used for transient expression studies, revealing the first details regarding the order of polyprotein processing.
DETECTION OF A NON-CULTIVATABLE CALICIVIRUS FROM THE WHITE TERN (GYGIS ALBA ROTHSCHILDI)
TLDR
Researchers observed a hand-reared white tern hatchling develop vesicular lesions on the webbing between its toes, 6 days after falling out of its nest, which is the first report of a calicivirus infection associated with vesicle disease in a wild avian species.
Cloning of a human parvovirus by molecular screening of respiratory tract samples.
TLDR
It is suggested that a systematic exploration of the viruses that infect humans, "the human virome," can be initiated, and a general culture-independent solution to the problem of detecting unknown virus species in single or pooled samples is provided.
...
1
2
...