Comparison of DNA sequences with protein sequences.

  title={Comparison of DNA sequences with protein sequences.},
  author={William R. Pearson and Troy R Wood and Zheng Zhang and Webb Miller},
  volume={46 1},
The FASTA package of sequence comparison programs has been expanded to include FASTX and FASTY, which compare a DNA sequence to a protein sequence database, translating the DNA sequence in three frames and aligning the translated DNA sequence to each sequence in the protein database, allowing gaps and frameshifts. Also new are TFASTX and TFASTY, which compare a protein sequence to a DNA sequence database, translating each sequence in the DNA database in six frames and scoring alignments with… CONTINUE READING
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Complete genome sequence of the methanogenic arch- FASTP and FASTA

  • C.J.
  • ‘‘Methods in Enzymology’’ (R. F. Doolittle,
  • 1996
Highly Influential
9 Excerpts

Comparison of methods for searching protein sequences within a specified diagonal band

  • W. R. Pearson
  • Comp . Appl . Biosci . sequence databases…
  • 1995
Highly Influential
4 Excerpts

Aligning two Pearson, W

  • Chao, K.-M., W. R. Pearson, W. Miller
  • R. (1995). Comparison of methods for searching…
  • 1992
Highly Influential
3 Excerpts

Aligning a DNA

  • A R., R. D. Fleischmann, +9 authors W. Miller
  • 1997

Complete genome sequence of the methanogenic archFASTP and FASTA . In ‘ ‘ Methods in Enzymology ’ ’ ( R . F . Doolittle , aeon , Methanococcus jannaschii

  • K.-M. Chao, W. R. Pearson, W. Miller
  • Science
  • 1996

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