Comparative Transcriptome Analysis Using High Papaverine Mutant of Papaver somniferum Reveals Pathway and Uncharacterized Steps of Papaverine Biosynthesis
@article{Pathak2013ComparativeTA, title={Comparative Transcriptome Analysis Using High Papaverine Mutant of Papaver somniferum Reveals Pathway and Uncharacterized Steps of Papaverine Biosynthesis}, author={Sumya Pathak and Deepika Lakhwani and Parul Gupta and Brij Kishore Mishra and Sudhir K. Shukla and Mehar Hasan Asif and Prabodh Kumar Trivedi}, journal={PLoS ONE}, year={2013}, volume={8} }
The benzylisoquinoline alkaloid papaverine, synthesized in low amount in most of the opium poppy varieties of Papaver somniferum, is used as a vasodilator muscle relaxant and antispasmodic. Papaverine biosynthesis remains controversial as two different routes utilizing either (S)-coclaurine or (S)-reticuline have been proposed with uncharacterized intermediate steps. In an attempt to elucidate papaverine biosynthesis and identify putative genes involved in uncharacterized steps, we carried out…
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References
SHOWING 1-10 OF 48 REFERENCES
Systematic silencing of benzylisoquinoline alkaloid biosynthetic genes reveals the major route to papaverine in opium poppy.
- Chemistry, BiologyThe Plant journal : for cell and molecular biology
- 2012
Virus-induced gene silencing in opium poppy is used to individually suppress the expression of six genes with putative roles in papaverine biosynthesis, highlighting (S)-coclaurine as a key branch-point intermediate in the main biosynthetic route to papaversine.
Comparative macroarray analysis of morphine containing Papaver somniferum and eight morphine free Papaver species identifies an O-methyltransferase involved in benzylisoquinoline biosynthesis
- Biology, ChemistryPlanta
- 2005
Analysis of substrate specificity of the heterologously expressed protein and mass spectrometric identification of the enzymatic products identified this protein as S-adenosyl-L-methionine:(R,S)-3′-hydroxy-N-methylcoclaurine 4′-O-methyltransferase (EC 2.1.116).
Comparative transcript and alkaloid profiling in Papaver species identifies a short chain dehydrogenase/reductase involved in morphine biosynthesis.
- Chemistry, BiologyThe Plant journal : for cell and molecular biology
- 2006
One of these cDNAs, exhibiting an expression pattern very similar to previously isolated c DNAs coding for enzymes in benzylisoquinoline biosynthesis, showed the highest amino acid identity to reductases in menthol biosynthesis and was identified as salutaridine reductase (SalR).
Characterization of Three O-Methyltransferases Involved in Noscapine Biosynthesis in Opium Poppy1[W]
- ChemistryPlant Physiology
- 2012
Comparative transcript and metabolite profiling revealed the occurrence of three cDNAs encoding O-methyltransferases designated as SOMT1, SOMT2, and SOMT3 that correlated with the accumulation of noscapine in the eight cultivars, confirming the selective roles for these enzymes in the biosynthesis of both alkaloids in opium poppy.
Functional characterization of a novel benzylisoquinoline O-methyltransferase suggests its involvement in papaverine biosynthesis in opium poppy (Papaver somniferum L).
- Chemistry, BiologyThe Plant journal : for cell and molecular biology
- 2009
The benzylisoquinoline alkaloids are a highly diverse group of about 2500 compounds which accumulate in a species-specific manner. Despite the numerous compounds which could be identified, the…
Developmental and inducible accumulation of gene transcripts involved in alkaloid biosynthesis in opium poppy.
- Biology, ChemistryPhytochemistry
- 2003
Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures
- BiologyBMC Plant Biology
- 2010
The integration of deep transcriptome and proteome analyses provides an effective platform to catalogue the components of secondary metabolism, and to identify genes encoding uncharacterized enzymes.
The biosynthesis of papaverine proceeds via (S)-reticuline.
- Chemistry, BiologyPhytochemistry
- 2010
The roles of latex and the vascular bundle in morphine biosynthesis in the opium poppy, Papaver somniferum.
- Chemistry, BiologyProceedings of the National Academy of Sciences of the United States of America
- 2004
The immunolocalization of five enzymes of alkaloid formation in opium poppy provides cell-specific localization that gives a coherent picture of the spatial distribution of alkAloid biosynthesis in poppy.
De Novo Assembly, Functional Annotation and Comparative Analysis of Withania somnifera Leaf and Root Transcriptomes to Identify Putative Genes Involved in the Withanolides Biosynthesis
- BiologyPloS one
- 2013
Comprehensive sequence resource developed for Withania will help to elucidate biosynthetic pathway for tissue-specific synthesis of secondary plant products in non-model plant organisms as well as will be helpful in developing strategies for enhanced biosynthesis of withanolides through biotechnological approaches.