Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data.

@article{Wen2018CoestimatingRP,
  title={Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data.},
  author={Dingqiao Wen and Luay Nakhleh},
  journal={Systematic biology},
  year={2018},
  volume={67 3},
  pages={
          439-457
        }
}
The multispecies network coalescent (MSNC) is a stochastic process that captures how gene trees grow within the branches of a phylogenetic network. Coupling the MSNC with a stochastic mutational process that operates along the branches of the gene trees gives rise to a generative model of how multiple loci from within and across species evolve in the presence of both incomplete lineage sorting (ILS) and reticulation (e.g., hybridization). We report on a Bayesian method for sampling the… CONTINUE READING
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