ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

@article{Bindea2009ClueGOAC,
  title={ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks},
  author={G. Bindea and Bernhard Mlecnik and Hubert Hackl and Pornpimol Charoentong and M. Tosolini and A. Kirilovsky and W. Fridman and F. Pag{\`e}s and Z. Trajanoski and J. Galon},
  journal={Bioinformatics},
  year={2009},
  volume={25},
  pages={1091 - 1093}
}
  • G. Bindea, Bernhard Mlecnik, +7 authors J. Galon
  • Published 2009
  • Computer Science, Medicine
  • Bioinformatics
  • We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. [...] Key Method A one-click update option allows ClueGO to automatically download the most recent GO/KEGG release at any time. ClueGO provides an intuitive representation of the analysis results and can be optionally used in conjunction with the GOlorize plug-in.Expand Abstract
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    References

    Publications referenced by this paper.
    SHOWING 1-10 OF 17 REFERENCES
    Gene Ontology: tool for the unification of biology
    • 27,362
    • Open Access
    GoMiner: a resource for biological interpretation of genomic and proteomic data
    • 1,237
    • Open Access
    The KEGG databases at GenomeNet
    • 1,204
    • Open Access
    A global pathway crosstalk network
    • 133
    • Open Access