CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0

@inproceedings{Galens2011CloVRMicrobeAG,
  title={CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0},
  author={Kevin Galens and James Robert White and Cesar Arze and Malcolm Matalka and Michelle G. Giglio and Samuel V. Angiuoli and W. Florian Fricke},
  year={2011}
}
The CloVR-Microbe pipeline performs the basic processing and analysis steps required for standard microbial single-genome sequencing projects: A) Whole-genome shotgun sequence assembly; B) Identification of protein and RNA-coding genes; and C) Functional gene annotation. B) and C) are based on the IGS Annotation Engine (http://ae.igs.umaryland.edu/), which is described elsewhere (K Galens et al. submitted). The assembly component of CloVRMicrobe can be executed independently from the gene… CONTINUE READING

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