Classify viruses — the gain is worth the pain

@article{Kuhn2019ClassifyV,
  title={Classify viruses — the gain is worth the pain},
  author={J. Kuhn and Y. Wolf and M. Krupovic and Yong-Zhen Zhang and P. Maes and V. Dolja and E. Koonin},
  journal={Nature},
  year={2019},
  volume={566},
  pages={318-320}
}
Viruses hold solutions to a lot of problems, so let’s fund and reward cataloguing, urge Jens H. Kuhn and colleagues.Viruses hold solutions to a lot of problems, so let’s fund and reward cataloguing, urge Jens H. Kuhn and colleagues. 

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References

SHOWING 1-7 OF 7 REFERENCES
Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)
TLDR
The ICTV has approved, by an absolute majority, the creation of additional taxonomical ranks above those recognized previously, to encompass the entire spectrum of virus diversity. Expand
Consensus statement: Virus taxonomy in the age of metagenomics
TLDR
The rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy is considered, and present proposals that have been endorsed by the Executive Committee of the ITV. Expand
Origins and Evolution of the Global RNA Virome
TLDR
A detailed phylogenomic reconstruction of the evolution of the dramatically expanded global RNA virome reveals the relationships between different Baltimore classes of viruses and indicates extensive transfer of viruses between distantly related hosts, such as plants and animals. Expand
Taxon Richness of “Megaviridae” Exceeds those of Bacteria and Archaea in the Ocean
TLDR
This study compared the taxon richness and phylogenetic diversity of Megaviridae, Bacteria, and Archaea using DNA-dependent RNA polymerase as a common marker gene and obtained results showing that the evolutionary rate alone cannot account for the observed high diversity of MegaViridae lineages. Expand
Patterns and ecological drivers of ocean viral communities
TLDR
These investigations establish a global ocean dsDNA viromic data set with analyses supporting the seed-bank hypothesis to explain how oceanic viral communities maintain high local diversity. Expand
A census-based estimate of Earth's bacterial and archaeal diversity
TLDR
These estimates constrain the extent of a poorly quantified rare microbial biosphere and refute recent predictions that there exist trillions of prokaryotic OTUs. Expand
Supplementary information accompanies this article: see go.nature.com/2tk6fpj
  • MBio 9,
  • 2018