Classification of molecular sequence data using Bayesian phylogenetic mixture models

@article{LozaReyes2014ClassificationOM,
  title={Classification of molecular sequence data using Bayesian phylogenetic mixture models},
  author={E. Loza-Reyes and M. A. Hurn and A. Robinson},
  journal={Comput. Stat. Data Anal.},
  year={2014},
  volume={75},
  pages={81-95}
}
  • E. Loza-Reyes, M. A. Hurn, A. Robinson
  • Published 2014
  • Computer Science, Biology, Mathematics
  • Comput. Stat. Data Anal.
  • Rate variation among the sites of a molecular sequence is commonly found in applications of phylogenetic inference. Several approaches exist to account for this feature but they do not usually enable the investigator to pinpoint the sites that evolve under one or another rate of evolution in a straightforward manner. The focus is on Bayesian phylogenetic mixture models, augmented with allocation variables, as tools for site classification and quantification of classification uncertainty. The… CONTINUE READING
    4 Citations

    References

    SHOWING 1-10 OF 67 REFERENCES
    Bayesian phylogenetic analysis of combined data.
    • 1,629
    • PDF
    A Phylogenetic Mixture Model for Heterotachy
    • 12
    A mixed branch length model of heterotachy improves phylogenetic accuracy.
    • 67
    • PDF
    PAML 4: phylogenetic analysis by maximum likelihood.
    • Z. Yang
    • Biology, Medicine
    • Molecular biology and evolution
    • 2007
    • 7,997
    • PDF
    A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data.
    • 454
    • Highly Influential
    • PDF
    A nonparametric method for accommodating and testing across-site rate variation.
    • 64
    • Highly Influential
    • PDF
    Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
    • M. Pagel, A. Meade
    • Biology, Medicine
    • Philosophical Transactions of the Royal Society B: Biological Sciences
    • 2008
    • 66
    • PDF
    Generalized mixture models for molecular phylogenetic estimation.
    • 12
    • PDF
    Invariable sites models and their use in phylogeny reconstruction.
    • 84
    • PDF