Challenges and Opportunities of Open Data in Ecology

@article{Reichman2011ChallengesAO,
  title={Challenges and Opportunities of Open Data in Ecology},
  author={O. J. Reichman and Matthew B. Jones and Mark Schildhauer},
  journal={Science},
  year={2011},
  volume={331},
  pages={703 - 705}
}
Ecology is a synthetic discipline benefiting from open access to data from the earth, life, and social sciences. Technological challenges exist, however, due to the dispersed and heterogeneous nature of these data. Standardization of methods and development of robust metadata can increase data access but are not sufficient. Reproducibility of analyses is also important, and executable workflows are addressing this issue by capturing data provenance. Sociological challenges, including inadequate… 

Navigating the unfolding open data landscape in ecology and evolution

TLDR
An overview of the landscape of online data infrastructures in ecology and evolutionary biology is provided, and an online collaborative platform to keep a community-driven, updated list of the best sources that enable search for data in one interface is introduced.

Tabular strategies for metadata in ecology, evolution, and the environmental sciences

TLDR
A new perspective and classify methods for metadata curation and development with tables are advanced and the added benefits of tables for metadata, a priori, are developed to ensure a more streamlined publishing process for many data repositories used in ecology, evolution, and the environmental sciences.

Research data management in the field of Ecology: an overview

TLDR
A comprehensive overview of the use of metadata models in the ecology domain through time is presented, finding 40 metadata models were found to be either referred or used by the biodiversity community from 1997 to 2018.

Identifiers in e-Science platforms for the ecological sciences

TLDR
The ease of making use of existing decentralized and unsupervised identifiers for a data repository is demonstrated, which opens new avenues to collaborative data discovery for learning, teaching, and research in ecology.

A metadata approach to evaluate the state of ocean knowledge: Strengths, limitations, and application to Mexico

TLDR
It is argued that systematic efforts such as this can often reveal an abundance of information for decision-makers to develop policies that meet key commitments on ocean sustainability.

ecocomDP: A flexible data design pattern for ecological community survey data

Public Data Archiving in Ecology and Evolution: How Well Are We Doing?

TLDR
It is suggested that cultural shifts facilitating clearer benefits to authors are necessary to achieve high-quality PDA and key guidelines to help authors increase their data’s reuse potential and compliance with journal data policies are highlighted.

A data management workflow of biodiversity data from the field to data users

TLDR
This data workflow is presented as a case study of how a collection of biodiversity data relating to Michigan prairie fens, including data on plant communities and the federally endangered Poweshiek skipperling, was collected, shared, and used from multiple sources.

Data platforms in integrative biodiversity research

Biodiversity and Freshwater Information Systems

Species observed in freshwaters are typically good indicators of the health/status of these ecosystems and are therefore frequently analyzed as part of ecological monitoring programs. The
...

References

SHOWING 1-10 OF 36 REFERENCES

Metadata Activities in Biology

TLDR
An overview of metadata initiatives undertaken by NBII and the Long Term Ecological Research Network is provided and new efforts to provide better metadata creation and curation tools based on content management systems with semantic mediation for data discovery are presented.

The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere

Bioinformatics, the application of computational tools to the management and analysis of biological data, has stimulated rapid research advances in genomics through the development of data archives

Understanding Environmental Complexity through a Distributed Knowledge Network

Abstract Understanding environmental complexity and other dimensions of ecological systems necessitates a holistic approach that can be achieved only by identifying, retrieving, and synthesizing

Accelerate Synthesis in Ecology and Environmental Sciences

Ecology is a leading discipline in the synthesis of diverse knowledge. Ecologists have had considerable experience in bringing together diverse, multinational data sets, disciplines, and cultural

Linking multiple workflow provenance traces for interoperable collaborative science

TLDR
A model for provenance sharing that realizes this holistic view by overcoming the various interoperability problems that emerge from the heterogeneity of workflow systems, data formats, and provenance models is presented.

Shedding Light on the Dark Data in the Long Tail of Science

  • P. Heidorn
  • Computer Science, Economics
    Libr. Trends
  • 2008
TLDR
How the concepts from long-tail economics can be used to understand potential solutions for better curation of dark data is discussed, which is not carefully indexed and stored and therefore is more likely to remain underutilized and eventually lost.

The Dryad Data Repository: A Singapore Framework Metadata Architecture in a DSpace Environment

TLDR
The efforts to bring the Dryad application profile into conformance with the Singapore Framework are reviewed and practical issues underlying the application profile implementation in a DSpace environment are discussed.

Linked data on the web (LDOW2008)

TLDR
This workshop summary will outline the technical context in which Linked Data is situated, describe developments in the past year through initiatives such as the Linking Open Data community project, and look ahead to the workshop itself.