ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

@inproceedings{Zhu2009ChIPpeakAnnoAB,
  title={ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data},
  author={Lihua Julie Zhu and Claude Gazin and Nathan D. Lawson and Herv{\'e} Pag{\`e}s and Simon M. Lin and David S. Lapointe and Michael R. Green},
  booktitle={BMC Bioinformatics},
  year={2009}
}
Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standard technologies for genome-wide identification of DNA-binding protein target sites. A number of algorithms have been developed in parallel that allow identification of binding sites from ChIP-seq or ChIP-chip datasets and subsequent visualization in the University of California Santa Cruz (UCSC) Genome Browser as custom annotation… CONTINUE READING
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