ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

@inproceedings{Li2009ChIAPETTF,
  title={ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing},
  author={Guoliang Li and Melissa J. Fullwood and Han Xu and Fabianus Hendriyan Mulawadi and Stoyan Velkov and Vinsensius B. Vega and Pramila Nuwantha Ariyaratne and Yusoff Bin Mohamed and Hong-Sain Ooi and Chandana Tennakoon and Chia-Lin Wei and Yijun Ruan and Wing-Kin Sung},
  booktitle={Genome Biology},
  year={2009}
}
Chromatin interaction analysis with paired-end tag sequencing (ChIA-PET) is a new technology to study genome-wide long-range chromatin interactions bound by protein factors. Here we present ChIA-PET Tool, a software package for automatic processing of ChIA-PET sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser. ChIA-PET Tool is fast, accurate… CONTINUE READING
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