CRISPR-Cas immunity in prokaryotes

@article{Marraffini2015CRISPRCasII,
  title={CRISPR-Cas immunity in prokaryotes},
  author={Luciano A. Marraffini},
  journal={Nature},
  year={2015},
  volume={526},
  pages={55-61}
}
Prokaryotic organisms are threatened by a large array of viruses and have developed numerous defence strategies. Among these, only clustered, regularly interspaced short palindromic repeat (CRISPR)-Cas systems provide adaptive immunity against foreign elements. Upon viral injection, a small sequence of the viral genome, known as a spacer, is integrated into the CRISPR locus to immunize the host cell. Spacers are transcribed into small RNA guides that direct the cleavage of the viral DNA by Cas… 

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References

SHOWING 1-10 OF 151 REFERENCES
CRISPR-Cas Immunity against Phages: Its Effects on the Evolution and Survival of Bacterial Pathogens
TLDR
It is hypothesized recently that CRISPR are in a constant state of flux and can appear and disappear depending on the selective forces of the environment, but it is not possible to determine unequivocally that lack of CRISpr in certain strains or species is due to loss of these loci.
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
TLDR
It is found that, after viral challenge, bacteria integrated new spacers derived from phage genomic sequences, and CRISPR provided resistance against phages, and resistance specificity is determined by spacer-phage sequence similarity.
Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes
TLDR
The results demonstrate that the formation of mature guide RNAs by the CRISPR RNA endonuclease subunit of Cascade is a mechanistic requirement for antiviral defense.
Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation.
TLDR
Surprisingly, it is found that Cas9, previously identified as the nuclease responsible for ultimate invader destruction, is also essential for adaptation, which indicates that the process of adaptation by a Type II-A CRISPR-Cas system in Streptococcus thermophilus requires Cas1, Cas2, and Csn2.
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
TLDR
The first examples of genes that mediate the inhibition of a CRISPR/Cas system are described, found in the genomes of bacteriophages infecting Pseudomonas aeruginosa and provides new insight into the co-evolution of phages and bacteria.
Self vs. non-self discrimination during CRISPR RNA-directed immunity
TLDR
Differential complementarity outside of the spacer sequence is a built-in feature of all CRISPR systems, indicating that this mechanism is a broadly applicable solution to the self/non-self dilemma that confronts all immune pathways.
A CRISPR-CAS System Mediates Bacterial Innate Immune Evasion and Virulence
TLDR
It is demonstrated that the Cas protein Cas9 of Francisella novicida uses a unique, small, CRISPR/Cas-associated RNA (scaRNA) to repress an endogenous transcript encoding a bacterial lipoprotein.
Short motif sequences determine the targets of the prokaryotic CRISPR defence system.
TLDR
It is shown that the conservation of proto-spacer adjacent motifs (PAMs) is a common theme for the most diverse CRISPR systems, implying that there is aCRISPR-type-specific (motif-directed) choice of the spacers, which subsequently determines the interference target.
CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA
TLDR
It is shown that CRISPR interference prevents conjugation and plasmid transformation in S. epidermidis and can limit the spread of antibiotic resistance in pathogenic bacteria.
...
1
2
3
4
5
...