CLIPdb: a CLIP-seq database for protein-RNA interactions

@article{Yang2015CLIPdbAC,
  title={CLIPdb: a CLIP-seq database for protein-RNA interactions},
  author={Yu-Cheng T. Yang and Chao Di and Boqin Hu and Meifeng Zhou and Yifang Liu and Nanxi Song and Y. Li and Jumpei Umetsu and Z. Lu},
  journal={BMC Genomics},
  year={2015},
  volume={16}
}
BackgroundRNA-binding proteins (RBPs) play essential roles in gene expression regulation through their interactions with RNA transcripts, including coding, canonical non-coding and long non-coding RNAs. [...] Key MethodDescriptionHere, we constructed a database, CLIPdb, to describe RBP-RNA interactions based on 395 publicly available CLIP-seq data sets for 111 RBPs from four organisms: human, mouse, worm and yeast. We consistently annotated the CLIP-seq data sets and RBPs, and developed a user-friendly…Expand
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Design and bioinformatics analysis of genome-wide CLIP experiments
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