CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy

  title={CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy},
  author={Saskia D. Hiltemann and Hailiang Mei and Mattias de Hollander and Ivo Palli and Peter J van der Spek and Guido Jenster and Andrew P. Stubbs},
BACKGROUND Complete Genomics provides an open-source suite of command-line tools for the analysis of their CG-formatted mapped sequencing files. Determination of; for example, the functional impact of detected variants, requires annotation with various databases that often require command-line and/or programming experience; thus, limiting their use to the average research scientist. We have therefore implemented this CG toolkit, together with a number of annotation, visualisation and file… CONTINUE READING
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