Building Gold Standard Corpora for Medical Natural Language Processing Tasks

@article{Delger2012BuildingGS,
  title={Building Gold Standard Corpora for Medical Natural Language Processing Tasks},
  author={Louise Del{\'e}ger and Qi Li and Todd Lingren and Megan Kaiser and Katalin Moln{\'a}r and Laura Stoutenborough and Michal Kouril and Keith Marsolo and Imre Solti},
  journal={AMIA ... Annual Symposium proceedings. AMIA Symposium},
  year={2012},
  volume={2012},
  pages={
          144-53
        }
}
We present the construction of three annotated corpora to serve as gold standards for medical natural language processing (NLP) tasks. Clinical notes from the medical record, clinical trial announcements, and FDA drug labels are annotated. We report high inter-annotator agreements (overall F-measures between 0.8467 and 0.9176) for the annotation of Personal Health Information (PHI) elements for a de-identification task and of medications, diseases/disorders, and signs/symptoms for information… CONTINUE READING
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