Boltzmann probability of RNA structural neighbors and riboswitch detection

@article{Freyhult2007BoltzmannPO,
  title={Boltzmann probability of RNA structural neighbors and riboswitch detection},
  author={Eva Freyhult and Vincent Moulton and Peter Clote},
  journal={Bioinformatics},
  year={2007},
  volume={23 16},
  pages={2054-62}
}
MOTIVATION We describe algorithms implemented in a new software package, RNAbor, to investigate structures in a neighborhood of an input secondary structure S of an RNA sequence s. The input structure could be the minimum free energy structure, the secondary structure obtained by analysis of the X-ray structure or by comparative sequence analysis, or an arbitrary intermediate structure. RESULTS A secondary structure T of s is called a delta-neighbor of S if T and S differ by exactly delta… CONTINUE READING
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