BitMapper: an efficient all-mapper based on bit-vector computing

@inproceedings{Cheng2015BitMapperAE,
  title={BitMapper: an efficient all-mapper based on bit-vector computing},
  author={Haoyu Cheng and Huaipan Jiang and Jiaoyun Yang and Yun Xu and Yi Shang},
  booktitle={BMC Bioinformatics},
  year={2015}
}
As the next-generation sequencing (NGS) technologies producing hundreds of millions of reads every day, a tremendous computational challenge is to map NGS reads to a given reference genome efficiently. However, existing methods of all-mappers, which aim at finding all mapping locations of each read, are very time consuming. The majority of existing all… CONTINUE READING

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