Biomolecules in the computer: Jmol to the rescue

@article{Herrez2006BiomoleculesIT,
  title={Biomolecules in the computer: Jmol to the rescue},
  author={A. Herr{\'a}ez},
  journal={Biochemistry and Molecular Biology Education},
  year={2006},
  volume={34}
}
  • A. Herráez
  • Published 2006
  • Medicine
  • Biochemistry and Molecular Biology Education
Jmol is free, open source software for interactive molecular visualization. Since it is written in the Java™ programming language, it is compatible with all major operating systems and, in the applet form, with most modern web browsers. This article summarizes Jmol development and features that make it a valid and promising replacement for Rasmol and Chime in the development of educational materials, as well as in basic investigation of biomolecular structure. The description is set up by… Expand
View on Wiley
ncbi.nlm.nih.gov
295 Citations
Highly Influential Citations
16
Background Citations
27
Methods Citations
63

295 Citations

Citation Type

Citation Type

Tools and Procedures for Visualization of Proteins and Other Biomolecules
3D visualization of molecular structures in the MOGADOC database
Refactoring the Code for Visualizing Protein Database Information in a 3D Viewer for Software Reusability
Conscript: RasMol to PyMOL script converter
SChiSM2: creating interactive web page annotations of molecular structure models using Jmol
  • S. Cammer
  • Computer Science, Medicine
  • Bioinform.
  • 2007
AMIPRO: A Content-Based Search Engine for Fast and Efficient Retrieval of 3D Protein Structures
IBiSS, a versatile and interactive tool for integrated sequence and 3D structure analysis of large macromolecular complexes
Computer-Aided Drug Discovery
  • W. Zhang
  • Methods in Pharmacology and Toxicology
  • 2016
SWIFT MODELLER v2.0: a platform-independent GUI for homology modeling
Molecular Modeling Applied to Nanobiosystems
...
1
2
3
4
5
...

References

SHOWING 1-10 OF 27 REFERENCES
An Introduction to Molecular Visualization: Seeing in Stereo with RasMol
The Protein Data Bank
Recent changes to RasMol, recombining the variants.
  • H. Bernstein
  • Medicine, Biology
  • Trends in biochemical sciences
  • 2000
Software for reviewing biomolecules in three dimensions on the Internet.
FirstGlance in Jmol: a simple tool for macromolecular visualization, available on-line at firstglance.jmol.org (free software
  • 2006
FirstGlance in Jmol: a simple tool for macromolecular visualization, available on-line at firstglance.jmol.org (free software, Creative Commons License)
  • 2006
A short history of visualizing structures in the PDB
  • RCSB PDB Newsletter
  • 2005
A short history of visualizing structures in the PDB, RCSB PDB Newsletter 25, 4–5, available on-line at www.pdb.org/ pdb/general_information/news_publications/newsletters/2005q1/education_corner.html
  • 2005
Atomic and ionic radii in Jmol, available on-line at biomodel
  • 2005
Atomic and ionic radii in Jmol, available on-line at biomodel.uah.es/jmol/radii/jmol_radii.en.html
  • 2005
...
1
2
3
...