Biochemical Reaction Rules with Constraints

  title={Biochemical Reaction Rules with Constraints},
  author={Mathias John and C{\'e}dric Lhoussaine and Joachim Niehren and Cristian Versari},
We propose React(C ), an expressive programming language for stochastic modeling and simulation in systems biology that is based on biochemical reactions with constraints. We prove that React(C ) can express the stochastic π-calculus, in contrast to previous rule-based programming languages, and further illustrate the high expressiveness of React(C ). We present a stochastic simulator for React(C ) independently of the choice of the constraint language C . Our simulator decides for a given… CONTINUE READING
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