Biochemical Reaction Rules with Constraints

@inproceedings{John2011BiochemicalRR,
  title={Biochemical Reaction Rules with Constraints},
  author={Mathias John and C{\'e}dric Lhoussaine and Joachim Niehren and Cristian Versari},
  booktitle={ESOP},
  year={2011}
}
We propose React(C ), an expressive programming language for stochastic modeling and simulation in systems biology that is based on biochemical reactions with constraints. We prove that React(C ) can express the stochastic π-calculus, in contrast to previous rule-based programming languages, and further illustrate the high expressiveness of React(C ). We present a stochastic simulator for React(C ) independently of the choice of the constraint language C . Our simulator decides for a given… CONTINUE READING
Highly Cited
This paper has 41 citations. REVIEW CITATIONS

Citations

Publications citing this paper.
Showing 1-10 of 25 extracted citations

Similar Papers

Loading similar papers…