Binding of nonintercalative antitumor drugs to DNA-polymers: structural effects of bisquaternary ammonium heterocycles.

@article{Burckhardt1987BindingON,
  title={Binding of nonintercalative antitumor drugs to DNA-polymers: structural effects of bisquaternary ammonium heterocycles.},
  author={G{\"u}nther Burckhardt and C. Zimmer and Bruce C. Baguley},
  journal={Journal of biomolecular structure \& dynamics},
  year={1987},
  volume={4 5},
  pages={
          813-31
        }
}
The binding of the antitumor agents SN-16814 nd SN-13232 to various DNA's in solution was monitored by CD and UV absorption measurements. In addition comparative studies with dA.dT containing duplex DNA of the related ligands SN-6136 and SN-6324 were included with respect to effects of structural variations. In general all four ligands show a dA.dT preference in their binding affinity to DNA. Differences were observed for the reaction of SN-16814 which contains bicyclic ring system: it has a… 
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  • Chemistry, Biology
    Journal of biomolecular structure & dynamics
  • 2000
Abstract Several 2,7-bis-[(dialkylamino)-acetylamino]-fluoren-9-one derivatives (fluoramides) were synthesized as analogues of the DNA binding compound tilorone

Efficient conjugation and characterization of distamycin-based peptides with selected oligonucleotide stretches.

UV results suggest that the thiazolidine and oxime linkages do not significantly influence the process of distamycin binding to the minor groove surface of the DNA duplex, and reinforce the fact that the specific stabilization of A/T rich DNA-DNA duplexes bydistamycin was preserved upon conjugation with oligonucleotide stretches.

Oligopyridine-ruthenium(II)-amino acid conjugates: synthesis, characterization, DNA binding properties and interactions with the oligonucleotide duplex d(5'-CGCGCG-3')2.

CD and T(m) data indicate that all diastereomeric complexes bind to the DNA major groove, Delta-diastereomers in a similar manner, while Lambda-diastsomers in dependence of the nature of the amino acid.

Sequence Specific Modulation of DNA Restriction Enzyme Cleavage by Minor Groove Binders

The inhibition of the restriction endonuclease PvuII indicates that ligand binding in close vicinity to the cleavage sites is also involved in the enzyme inhibition, and the dAdT-content in proximity to the palindromic sequences of three DraI cutting sites in pUC19 DNA explains why the derivative SN 6053 protects these sequences in different manners.

DNA Binding Properties of Novel Dansylated Distamycin Analogues in Which the Fluorophore is Directly Conjugated to the N-methyl-pyrrole Carboxamide Backbone

Two oligopeptides that bear the dansyl group coupled directly to the N-terminus of the conjugated N-methylpyrrole carboxamide network are developed and ‘reported’ DNA binding in the form of an enhanced fluorescence emission.

DNA binding selectivity of oligopyridine-ruthenium(II)-lysine conjugate.

Circular dichroism studies indicate that the hydrolyzed complex binds to DNA, increasing the unwinding of the DNA helix with an unwinding angle calculated as Φ = 12 ± 2°.

DNA binding of the nonintercalative ligands SN-6132, SN-6131 and SN-6113: minor variations of the ligand structure may cause changes in the base pair preference.

The DNA binding selectivity of three ligands of a series of antitumor agents of bisquaternary ammonium heterocycles has been investigated by means of CD spectroscopy and melting measurements and it is concluded that the agents SN-6132,SN-6131 and SN- 6113 have relatively high affinity to AT base pair sequences whereas the binding to GC pairs is very low.

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  • C. ZimmerChristian MarckWilhelm Guschlbauer
  • Biology, Chemistry
    FEBS letters
  • 1983

Influence of nucleotide sequence on dA.dT-specific binding of Netropsin to double stranded DNA.

It is experimentally shown that the insertion of a dG.dC pair in dA.dT sequences strongly reduces the specific interaction of Nt with DNA duplexes.