Bases of motifs for generating repeated patterns with wild cards

@article{Pisanti2005BasesOM,
  title={Bases of motifs for generating repeated patterns with wild cards},
  author={Nadia Pisanti and Maxime Crochemore and Roberto Grossi and Marie-France Sagot},
  journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},
  year={2005},
  volume={2},
  pages={40-50}
}
Motif inference represents one of the most important areas of research in computational biology, and one of its oldest ones. Despite this, the problem remains very much open in the sense that no existing definition is fully satisfying, either in formal terms, or in relation to the biological questions that involve finding such motifs. Two main types of motifs have been considered in the literature: matrices (of letter frequency per position in the motif) and patterns. There is no conclusive… CONTINUE READING
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