Base pair stacking in nucleosome DNA and bendability sequence pattern.

Abstract

DNA deformation in the nucleosome involves partial unstacking between bases and base pairs. By adjusting orientations of different base-pair stacks relative to the histone octamer surface, the optimal set of stacks and their positions is derived, resulting in a sequence pattern, theoretically best suitable for nucleosome DNA. The sequence is very much… (More)
DOI: 10.1016/j.jtbi.2009.11.020

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