Bartender: a fast and accurate clustering algorithm to count barcode reads.

  • Lu Zhao, Zhimin Liu, Sasha F Levy, Song Wu
  • Published 2017 in Bioinformatics

Abstract

Motivation Barcode sequencing (bar-seq) is a high-throughput, and cost effective method to assay large numbers of cell lineages or genotypes in complex cell pools. Because of its advantages, applications for bar-seq are quickly growing - from using neutral random barcodes to study the evolution of microbes or cancer, to using pseudo-barcodes, such as shRNAs… (More)
DOI: 10.1093/bioinformatics/btx655

Cite this paper

@article{Zhao2017BartenderAF, title={Bartender: a fast and accurate clustering algorithm to count barcode reads.}, author={Lu Zhao and Zhimin Liu and Sasha F Levy and Song Wu}, journal={Bioinformatics}, year={2017} }