Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format

@article{Edmonson2011BambinoAV,
  title={Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format},
  author={Michael N. Edmonson and Jinghui Zhang and Chunhua Yan and Richard P. Finney and Daoud M. Meerzaman and Kenneth H. Buetow},
  journal={Bioinformatics},
  year={2011},
  volume={27 6},
  pages={
          865-6
        }
}
SUMMARY Bambino is a variant detector and graphical alignment viewer for next-generation sequencing data in the SAM/BAM format, which is capable of pooling data from multiple source files. The variant detector takes advantage of SAM-specific annotations, and produces detailed output suitable for genotyping and identification of somatic mutations. The assembly viewer can display reads in the context of either a user-provided or automatically generated reference sequence, retrieve genome… 
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