Automatic comparison and classification of protein structures.

  title={Automatic comparison and classification of protein structures.},
  author={Janne Ravantti and Dennis Henry Bamford and David I Stuart},
  journal={Journal of structural biology},
  volume={183 1},
The classification and alignment of multiple three-dimensional protein structures is a powerful way to detect similarities that cannot be discovered from the sequences alone and can help to infer phylogeny. However, the alignment process remains problematic for divergent structures. We have devised a fully automatic pipeline, HSF, drawing its inspiration from well-known structural alignment methods, which given a list of structures not only aligns all pairs but also classifies them fully. We… CONTINUE READING

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