Archaeal genetics — the third way

@article{Allers2005ArchaealG,
  title={Archaeal genetics — the third way},
  author={Thorsten Allers and Moshe Mevarech},
  journal={Nature Reviews Genetics},
  year={2005},
  volume={6},
  pages={58-73}
}
For decades, archaea were misclassified as bacteria because of their prokaryotic morphology. Molecular phylogeny eventually revealed that archaea, like bacteria and eukaryotes, are a fundamentally distinct domain of life. Genome analyses have confirmed that archaea share many features with eukaryotes, particularly in information processing, and therefore can serve as streamlined models for understanding eukaryotic biology. Biochemists and structural biologists have embraced the study of archaea… 
Genetic technologies for Archaea.
Archaeal Communities: The Microbial Phylogenomic Frontier
TLDR
Phylogenomic investigations reveal the complex evolutionary history of Archaea, overturning longstanding views of the history of life and determining the basis for living in extreme environments.
Genomic studies of uncultivated archaea
TLDR
Genetic studies of uncultivated archaea are reviewed within a framework of the phylogenetic diversity and ecological distribution of this domain to reveal considerable heterogeneity among archaeal strains.
Archaea — timeline of the third domain
TLDR
This Review charts the 'archaea movement', from its genesis through to key findings that illustrate just how strongly the field has built on new knowledge to advance the understanding not only of the Archaea, but of biology as a whole.
Archaeal DNA replication and repair.
Haloferax volcanii—a model archaeon for studying DNA replication and repair
TLDR
This review will focus on DNA replication and DNA repair pathways in H. volcanii, how this work has advanced the knowledge of archaeal cellular biology, and how it may deepen the understanding of bacterial and eukaryotic processes.
Information Processing Differences Between Archaea and Eukaraya — Implications for Homologs and the Myth of Eukaryogenesis
TLDR
It is shown how the key molecular features surrounding DNA replication, transcription, and translation are fundamentally distinct in eukarya despite superficial similarities to prokaryotes, particularly archaea.
Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales.
TLDR
This review presents the advantages and disadvantages of working with each archaeal group, gives an overview of their different genetic systems, and direct the neophyte archaeologist to the most appropriate model organism.
Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes
TLDR
A machine-learning approach to identify 3537 discrete orthologue protein sequence groups distributed across all available archaeal genomes is developed and proposed and provided evidence for a methanogenic origin of the Archaea and evidence in support of an origin for Eukarya either within or as sisters to the Thaumarchaea.
Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes
TLDR
An overview of state-of-the-art cultivation-independent genomics approaches is provided, and how these methods were used to obtain draft genome sequences of several novel members of the TACK superphylum are demonstrated, including Lokiarchaeum, two representatives of the Miscellaneous Crenarchaeotal Group (Bathyarchaeota), and a Kor Archaeum-related lineage.
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TLDR
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