Applications of GeneMark in Multispecies Environments

  title={Applications of GeneMark in Multispecies Environments},
  author={James D. McIninch and William S. Hayes and Mark Borodovsky},
  journal={Proceedings. International Conference on Intelligent Systems for Molecular Biology},
This paper is supposed to bridge the gap between practical experience in using GeneMark for a rapidly widening repertoire of genomes, and the available publications that determine and compare the gene prediction accuracy of the GeneMark method for different genomes. Here we focus on the genome-specific variability of prediction error rates and their sources. DNA sequence inhomogeneity is present both in training and control sets of coding and non-coding regions. Coding region inhomogeneity… CONTINUE READING


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