Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences

@article{Soltis2000AngiospermPI,
  title={Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences},
  author={Douglas E. Soltis and Pamela S. Soltis and Mark W. Chase and Mark E Mort and Dirk C. Albach and Michael J. Zanis and Vincent Savolainen and William H. Hahn and Sara B. Hoot and Michael F. Fay and Michael J. Axtell and Susan M. Swensen and Linda M. Prince and W. John Kress and Kevin C Nixon and James S Farris},
  journal={Botanical Journal of the Linnean Society},
  year={2000},
  volume={133},
  pages={381-461}
}
Abstract A phylogenetic analysis of a combined data set for 560 angiosperms and seven outgroups based on three genes, 18S rDNA (1855 bp), rbcL (1428 bp), and atpB (1450 bp) representing a total of 4733 bp is presented. Parsimony analysis was expedited by use of a new computer program, the RATCHET. Parsimony jackknifing was performed to assess the support of clades. The combination of three data sets for numerous species has resulted in the most highly resolved and strongly supported topology… 
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References

SHOWING 1-10 OF 301 REFERENCES
Molecular Phylogenetic Relationships Among Angiosperms: An Overview Based on rbcL and 18S rDNA Sequences
TLDR
18S rDNA sequence analysis confirms the rbcL-based inferences that Droseraceae and Nepenthaceae are closely related to the Caryophyllidae and that a number of members of Rosidae and Dilleniidae have as their closest relatives members of Asteridae.
A molecular evaluation of the monophyly of the order Ebenales based upon rbcL sequence data
Molecular support for monophyly of Ebenales and its phylogenetic relationships to other dicot families was investigated using parsimony analysis of nucleotide sequences of the large subunit of
Phylogeny of the eudicots : a nearly complete familial analysis based on rbcL gene sequences
TLDR
A phylogenetic analysis of 589 plastid rbcL gene sequences representing nearly all eudicot families was performed, and bootstrap re-sampling was used to assess support for clades.
Inter-familial relationships in the Ranunculidae based on molecular systematics
TLDR
Cl cladistic analysis of the combined molecular data sets for all three genes provides important new data with which to test previous hypotheses of inter-familial relationships in the angiosperm subclass Ranunculidae.
Phylogenetic relationships of Cornaceae and close relatives inferred from matK and rbcL sequences.
TLDR
Comparisons of matK and rbcL sequences based on one of the most parsimonious rBCL-matK trees indicate that matK has a much higher A-T content and a lower transition:transversion ratio and among- lineages rates of nucleotide substitutions in r bcL are basically homogeneous throughout Cornales, but are more heterogeneous in matK.
The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes
TLDR
This study demonstrates that Amboreella, Nymphaeales and Illiciales-Trimeniaceae-Austrobaileya represent the first stage of angiosperm evolution, with Amborella being sister to all other angiosperms, and shows that Gnetales are related to the conifers and are not sister to the angios perms, thus refuting the Anthophyte Hypothesis.
Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences.
TLDR
A phylogenetic analysis of flowering plants based on a second plastid gene, atpB, analyzed separately and in combination with rbcL sequences for 357 taxa demonstrates that phylogenetics analysis of large matrices is feasible.
Phylogenetic analysis of the Zingiberales based on rbcL sequences.
TLDR
A parsimony analysis of DNA sequences from the chloroplast-encoded gene, rbcL, for 2 1 species of Zingiberales and proposed relatives results in the same most parsimonious tree for taxa within the Zingibales and the immediate outgroup.
Relationships and evolution of Hydrangeaceae based on RBCl sequence data
TLDR
Analysis of rbcL sequences suggests that Fendlera and Jamesia are sister to the remainder of the family, lending support to the hypothesis that at least some Carpenterieae are basal in the family and that Hydrangeaceae may have originated in xeric habitats.
Relationships of Droseraceae: A cladistic analysis of RBCL sequence and morphological data
Molecular support for the monophyly of Droseraceae and its phylogenetic relationships to other dicot families was investigated using parsimony analysis of nucleotide sequences of the large subunit of
...
1
2
3
4
5
...